intervalframe.IntervalSeries

class intervalframe.IntervalSeries(intervals, series=None, labels=None, dtype=None, copy_series=False, copy_intervals=False)

Annotated augmented interval list

IntervalFrame stores a intervals

Attributes

iloc
loc
shape
values

Methods

bin_coverage([bin_size, min_length, max_length])	Find sum of coverage within binned positions
bin_nhits([bin_size, min_length, max_length])	Find number of intervals overlapping binned positions
copy()	Copy IntervalSeries
coverage()	Find number of intervals overlapping every position in the IntervalFrame
difference(iframe)	Remove any overlapping intervals
downsample(proportion)	Randomly downsample intervals
ends()
exact_match(iframe)	Find exact matches between LabeledIntervalArrays
from_array(starts, ends[, labels])
intersect(start, end[, label])	Find intersecting intervals
length_dist()	Calculate length distribution of intervals
merge([gap])	Annotate values in one IntervalFrame with another
nhits(start, end)	Find number of intersecting intervals
nhits_from_array(starts, ends)	Find number of intersecting intervals
overlap(iframe[, key])	Find overlaps in one IntervalFrame with another
segment([method, cutoff, hazard, shuffles, p])	Annotate values in one IntervalFrame with another
starts()
subtract(iframe)	Subtract intersecting regions for IntervalFrame
wps([protection, min_length, max_length])	Calculate Window Protection Score for each position in AIList range