linear_segment

June 7, 2023 | Categories: c cython python

Linear segmentation using Bayesian Change Point Segmentation or Circular Binary segmentation.

intervalframe

June 7, 2023 | Categories: python

This is a Python package for easy and efficient manipulation of intervals in a pandas-like format.

ailist

June 7, 2023 | Categories: c cython python

Augmented interval list (AIList) is a data structure for enumerating intersections between a query interval and an interval set. AILists have previously been shown to be faster than interval tree, NCList, and BEDTools.